PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG190300.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MIKC_MADS
Protein Properties Length: 242aa    MW: 27823.7 Da    PI: 9.0014
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG190300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.15e-281059251
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         ri+n++ rqvtfskRrngi+KKA EL +LCdaev ++ifsstg+lyey+s
  Pavir.7KG190300.1.p 10 RIDNSTSRQVTFSKRRNGIFKKARELAILCDAEVGLVIFSSTGRLYEYAS 59
                         8***********************************************86 PP

2K-box89.85.1e-3076171398
                K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 
                          +++ +++ +++ + +q+e+a L+++++nLq+++R+l+G+dL+ L +keLq+Le+qLe s++ iR+kK++ll+++i+el +k   +q++n+
  Pavir.7KG190300.1.p  76 EQQLVANPNTELKFWQREAASLRQQLQNLQENHRQLMGQDLSGLGVKELQNLENQLEMSIRCIRTKKDQLLVDEIHELNRKGSLIQQDNM 165
                          456667889999****************************************************************************** PP

                K-box  93 aLrkkl 98 
                          +L +k+
  Pavir.7KG190300.1.p 166 ELYRKV 171
                          ***997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.791161IPR002100Transcription factor, MADS-box
CDDcd002653.36E-44278No hitNo description
SuperFamilySSF554553.4E-32282IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-28323IPR002100Transcription factor, MADS-box
PfamPF003191.4E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.3E-2784171IPR002487Transcription factor, K-box
PROSITE profilePS5129715.81687177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRNGIFK KARELAILCD AEVGLVIFSS TGRLYEYAST  60
SMKSVIDRYG RAKQEEQQLV ANPNTELKFW QREAASLRQQ LQNLQENHRQ LMGQDLSGLG  120
VKELQNLENQ LEMSIRCIRT KKDQLLVDEI HELNRKGSLI QQDNMELYRK VNLIRQENVE  180
LYKKLYEKEA AGEINRDSTA PYNFAVVEND NTPIHLELNT LPQENTIEQP SPPKLGLQLN  240
P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_S1e-19169169Myocyte-specific enhancer factor 2B
1tqe_R1e-19169169Myocyte-specific enhancer factor 2B
1tqe_Q1e-19169169Myocyte-specific enhancer factor 2B
1tqe_P1e-19169169Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975863.11e-159PREDICTED: MADS-box transcription factor 27-like
SwissprotQ6EP491e-145MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A059Q1L51e-156A0A059Q1L5_9POAL; MADS-box transcription factor
STRINGOB04G22330.11e-150(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61435130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.13e-94AGAMOUS-like 16